If you need your model to move again on screen, readjust your model and reuse the 'show orientation' command and once again copy the 'moveto' text into your script. Place this text into your e-posterscript. Copy the first four or so lines of text that starts with 'moveto' and goes until #OR (you do not have to include the #OR). A set of text will pop up within your console. Next, type 'show orientation' into your Jmol console. You can rotate, translate, or zoom in on your protein to get it into position. Although it doesn't matter for building the physical model, the move command can be used in tutorials to smoothly transition between different views of your model on screen.įirst, line up your model on the screen as you'd want it to appear in the tutorial. The move command allows you move your protein model around your Jmol screen. It'll all depend on what you want to show and when. Think of this as a script buffet – pick and choose what you want to use to get your story across. You don't have to use every type of command in one of your buttons, nor do you have to use them in the order presented here. Initial Script - ACE with Lisinopril - PDB ID: 1o86īelow is a series of advanced scripting commands for tutorials. All cassettes will be written in the single command line format, with a semi-colon separating individual commands.ĭefine ligbind ( LPR) Background white backbone only Backbone 1.5 Color backbone green select ligbind spacefill 1.25 wireframe 1.0 color cpkĬlick on the button below to execute this script. Any text in blue indicates a variable that must be specified based on the pdb file you are using. In these examples, angiotensin converting enzyme (ACE) with bound Lisinopril is used (1o86.pdb). To get started, you will first have to set up the static image of your model design. With these script cassettes, you can focus your audience on different parts of your protein to tell its molecular story. Advanced scripting for e-posters takes the script of your static protein and elevates it to include elements like flashing or moving.
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